FreeSurfer terminal commands

 FreeSurfer terminal commands Useful freesurfer commands to perform various actions.  What is freesurfer? FreeSurfer is a software package for the analysis and visualization of structural and functional neuroimaging data from cross-sectional or longitudinal studies. It is developed by the Laboratory for Computational Neuroimaging at the Athinoula A. Martinos Center for Biomedical Imaging. FreeSurfer is Read more…

How to get ROIs from Kastner FreeSurfer Atlas

How to get ROIs from Kastner FreeSurfer Atlas? Probabilistic maps of visual topography in human cortex: An atlas from Sabine Kastner’s Lab !! FreeSurfer v5.3 is needed !! Creating Volumetic Kastner Atlas (not really necessary): Left hemisphere ./surf2vol.sh ./Kastner2015Labels-LH.mgz E01S05 lh freesurfer $SUBJECTS_DIR/E01S05/mri/lh.kastner_freesurfer.mgz Right hemisphere ./surf2vol.sh ./Kastner2015Labels-LH.mgz E01S05 rh freesurfer Read more…