notebook

FreeSurfer terminal commands

 FreeSurfer terminal commands Useful freesurfer commands to perform various actions.  What is freesurfer? FreeSurfer is a software package for the analysis and visualization of structural and functional neuroimaging data from cross-sectional or longitudinal studies. It is developed by the Laboratory for Computational Neuroimaging at the Athinoula A. Martinos Center for Biomedical Imaging. FreeSurfer is Read more…

notebook

How to get ROIs from Kastner FreeSurfer Atlas

How to get ROIs from Kastner FreeSurfer Atlas? Surface based → Volume based Probabilistic maps of visual topography in human cortex: An atlas from Sabine Kastner’s Lab !! FreeSurfer v5.3 is needed !! Creating Volumetic Kastner Atlas (not really necessary): Left hemisphere ./surf2vol.sh ./Kastner2015Labels-LH.mgz E01S05 lh freesurfer $SUBJECTS_DIR/E01S05/mri/lh.kastner_freesurfer.mgz Right hemisphere Read more…

skills

(Adobe) InDesign for Beginners

Last week I completed my first teaching experience with a doctoral course I proposed to the Graduate Training Centre. It was titled “(Adobe) InDesign for Beginners“. Even though I root for open source tools, I cannot deny that leading commercial software inspires open-source and creates the demand. I started to use Read more…

hobby

Neuromag

Neuromag – my favourite hobby during PhD The Neuromag is a science-focused magazine created by graduate students in Tübingen. Our intention is to create a magazine that is interesting for scientists and non-scientists alike. Issue 4 Articles 100% Design 100% Print 100% Issue 3 Articles 100% Design 100% Print 100% Read more…

events

Upcoming

Events Conference for Junior Neuroscientists NeNa is an annual event organized by Tübingen University doctoral students. The conference is largely for neuroscientists from various disciplines. Interested students are encouraged to join and help make NeNa a fun and interactive conference. The topics at NeNa are integrative and diverse and individuals Read more…

remember

Cognitive Biases

A Cognitive Bias is an involuntary pattern of thinking that produces distorted perceptions of people, surroundings, and situations around us. You can also consider it an altered way of thinking that affects our perceptions and decisions, and can cause mistakes in reasoning, logic, and evaluation. There are differing varieties of Read more…